CDS

Accession Number TCMCG081C20964
gbkey CDS
Protein Id XP_002263967.1
Location join(16961991..16962323,16963942..16964033,16964957..16965042,16965112..16965248,16968719..16968793,16969041..16969132,16970307..16970378,16988175..16988254,16988358..16988395,16988484..16988490,16988804..16988959,16991626..16991701,16999702..16999826,16999924..16999958,17000055..17000113,17005794..17005877,17006311..17006406,17006506..17006554,17006717..17006804,17007007..17007210,17007851..17007976,17008173..17008272,17008370..17008475,17008717..17008847,17008979..17009140,17010661..17010816,17011939..17012662)
Gene LOC100258105
GeneID 100258105
Organism Vitis vinifera

Protein

Length 1162aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA33471
db_source XM_002263931.3
Definition PREDICTED: DNA ligase 4 isoform X1 [Vitis vinifera]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10777        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03450        [VIEW IN KEGG]
map03450        [VIEW IN KEGG]
GOs GO:0000726        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006297        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006303        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010165        [VIEW IN EMBL-EBI]
GO:0010212        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032807        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048046        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTGCGAAGAAACCAAGTTCAGTGTTCTGTGCAGCCTCTTCACATGGATTCAGAGGAGCAGAACCTCCGCCAAGAAGCGTTCCAAGTTCCGCATATTCCTCGACACCTTTTGCATAAACGGCCACCAGTTCAGCGCCATACGATTGATCCTCCCCAACCTCGACCGCGAGAGGGGCTCCTACGGACTCAAGGAGTCCGTGCTCGCCACTTGCCTCATTGACGCCCTCGGCATGTCCAGGGAGTCCGAGGACGCCCTTCGCCTCATCAACTGGCGAAAAGGGGGTGCTAAAACCGGCGCCAATGCTGGAAATTTTGCCATGGTCGCGGCTGAAGTGCTGCAGCGTCGGCAAGGAATGACTTCTGGTGGACTGACAATCAAGGAGTTGAATGATTTGCTTGATTGTTTAGCTTCAAGTGAAAATAGAACAGAGAAGACTTCAGTCCTTTCTACCCTGATCAAGAAAACAAACGCACAGGAAATGAAGTGGATTGTCATGATAATTCTGAAAGACCTGAAGTTGGGAATCAGTGAAAAAAGCATCTTCCATGAATTCCATCCGGATGCAGAGGACTTGTTTAATGTCACATGCGACTTGAAACTTGTTTGTGAAAAGCTCAAGGATCGAAGTCAAAGGCATAAACGCCAGGATATTGAAGTTGGAAAAGCTGTGCGACCCCAACTAGCTATGAGGGTTGCTGATGCAACTGCAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAGTTTGATGGTGACCGCATCCAAATTCATAAGAATGGAGAAGAAATACACTTCTTCTCAAGGAACTTCCTTGATCACCCTGAATATAAATATGCAATGTCAAACATTGTTGCACAAAATCTTTTGGTTGATAGGTGTATACTTGATGGTGAAATGTTGGTATGGGACATATCGCTGAATCGTTTTGCTGAGTTTGGTTCAAATCAGGAAATAGCAAAGGCAGCAAAGGAGGGGCTTGACAGTGATCGGCAGTTGTGCTATGTTGCTTTCGACATTCTTTATGTTGGAGATACTAGTGTCATTCACCAAACCTTGAAGGAACGGCATGAGCTTTTGCAGAAAGTCGTGAAGCCTTTGAAGGGTCGTTTTGAAATCTTAGTACCTTCTGGTGGTCTTAATACTCACCGTCCTTCTGGGGAACCATGTTGGTCACTTATTGCTTATGATGTGGATGATGTCGAGAGGTTCTTCAAGAAAACTGTTGAAAATAGAGATGAAGGCATTGTTTTAAAAGACCTTGGTTCAAAATGGGAGCCAAGTGACAGGAGTGGAAAGTGGTTAAAGTTGAAGCCTGAGTATGTTCATGCAGGTTCTGACCTTGATGTTCTTATAATAGGAGGGTATTATGGTTCTGGGCGTCGTGGAGGAGAGGTAGCTCAATTCTTGGTGGGCCTTGCTGACCATTCAGGCCCTGACACATATCCCAGACGATTCATTTCCTTTTGCAGAGTGGGTACTGGACTTTCTGATGACGAGCTTGATGCTGTTGTAACAAAATTGAAGCCTTATTTCAGGAAAAATGAATACCCAAAAAAGGCACCACCAAGCTTTTATCAAGTCACAAATAATTCAAAAGAGAGACCAGACATTTGGATTGATAGCCCTGAAAAATCAATTATACTTTCTATTACTAGTGATATCCGAACAATAAGGTCTGAGGTATTTGCTGCACCATACAGCCTGAGGTTCCCACGCATTGATTGTGTGAGATATGACAAGCCTTGGCATGAATGCCTTGATGTGCAATCTTTTATGGAATTGGTACATTCAAGCAATGGTACCACGCAGAGAGGGGCAGATTATGGGCGCATGCAAGATAGTAAACCAAAGCGCATGAAATCCTCTAAGAAAGGAGAGCAAAAGACTGCTCATGTTGTTCCTTCTCATTTTATGCAGACTGATGTTACCAATGTCAAGGGCGAAACGCTAATATTTTCGAACATGATGTTTTACTTTGTTAATACACCTCCAACCCATTCTCTTGATTCCTTGCATAAATTGGTGGTTGAGAATGGAGGAACCTTCTCAATGAATCTGAATAATTCAGTTACACATTGTGTTGCAGCTCAAAGTAAAGGTATCAAATATCAGGCAGCAAAGCTTCGTGGAGATATTATTCATTGTTCTTGGGTCTTTGACTGTTGTTCACAGAAAAAGCTCCTTCCTTTACAGCCAAAGTACTTTCTCTTCCTTTCTGAACATTCAAAGAAGAAGTTACAAGAGGAAATTGACAAATTTTCTGACTCCTACTACCAGGATCTTGACATTTCAGACATCAAGCAGCTTTTAAGCAATGTGGATAGGTCAGACAACTCCAAAACTATTGATTACTACAAGAACAAATATTGTCCAAAGGAAAAGTGGTCGCGCTTTCATGATTGCTGCATTTGCTTCCACTCCTCAATACAGTCTTCTAATTCGGATTGGGAACTTCTGTCAAAACTTGCGCTGAGGAGGATGAAGCTTGAAGTTTCCATGGGTGGTGGTAAAGTTGGCAATAATCTTTCTCAGGCCACCCATTTAGTGGTCTTTTCAGTACCAGGATTTGATTTGGACTTCAGTGACATAATGGAAAGTTTCTCACCAGCAGAGAAACATCTTCTATGTAATAAAAAGTTGCATGTTGTTGGGTATCAATGGTTAGAAGGCTGCTTGGAGGAGGGCCGGAGGTTGCAAGAACAGAAATATAGCCTGAAACCTGAGGGCTTGGAAGAGTCAAACTTTGGAGAATGCAAACATGATATAGATGTAGAAGCCCCTTCTGTTTTGGACAGTGTGGAGAACCAAAATTTGGTGTCTTTTCCAGACAAAGAAGGGAAACAAGGTAGAGGAAAAGCTCCTCCAGAAAGCATTAGTATCTTGGCCTCGCCCAAGAGGGACGAGAAAAGGAAAAGAGGAAGGCCTGCTGGCCCAAGCACAAAGAAAGGAAAAGCAGGTTTCAGCCAAGCTCGAAGGACACGGCCCCGGATTGGTAAGCCACCTAAGATATATGAAAACGAATCAGATGCAAGCGATTCAGGTGAAAAAATGGAAGAGGAAGGGACCAAAATGGGAGGGAATCATGCAATCCATGGAGTCGAATGCAAGGAATGTCCAGAAATCCAAGAGACTGAAATAGTAGAAGATTCTGAATCATCACAAAGAGGAAAGACAGAAGAAAAGGAGGTTGCACTAGATAATGTACGTGAAAAATGGTTAGATAGAGCACAGGACATTGAACTGGATAGTGAAAATAAGGTTGACAACAGTAAAAAGACTGAGAAGCTGGAAGTTATGGTTGATCCAGTTCAAGCCATGCTACTAGACATGATACCGAGCCTTGGAGTGAAAAAGGCGGAAAGTACAAATCCTATTATTGATGATGAGAAGCCTCCAGTAGAGCAGGGTGCAGAACCTGTGAAGAAAAAGAAAGTCAGCTACAAGGATGTCGCTGGAGCACTGCTGAAGGATTGGTGA
Protein:  
MCEETKFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGSYGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMTSGGLTIKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWKKLHGKEVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILDGEMLVWDISLNRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYVGDTSVIHQTLKERHELLQKVVKPLKGRFEILVPSGGLNTHRPSGEPCWSLIAYDVDDVERFFKKTVENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYVHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADHSGPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNEYPKKAPPSFYQVTNNSKERPDIWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDCVRYDKPWHECLDVQSFMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHFMQTDVTNVKGETLIFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQSKGIKYQAAKLRGDIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSYYQDLDISDIKQLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWELLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGRRLQEQKYSLKPEGLEESNFGECKHDIDVEAPSVLDSVENQNLVSFPDKEGKQGRGKAPPESISILASPKRDEKRKRGRPAGPSTKKGKAGFSQARRTRPRIGKPPKIYENESDASDSGEKMEEEGTKMGGNHAIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVEQGAEPVKKKKVSYKDVAGALLKDW